SNPs identified in A. vaga individuals L1-L11
Year: 2020
Type: dataset
Abstract: This dataset includes SNPs detected among 11 A. vaga individuals L1-L11 (SNP dataset I). SNPs were called with SAMtools/BCFtools (v.1.4.1) from alignments of HiSeq reads to the L1 haploid sub-assembly. File 'A.vaga.L1_L11.SNP.dataset.I.raw.vcf' contains raw variant calls (raw INDEL entries are also present). Filtered SNPs (stringent SNP dataset I) are contained in the file 'A.vaga.L1_L11.SNP.dataset.I.filtered.vcf'. Data are in the VCF format.
Source: Figshare
Authors: Vakhrusheva, Olga, Mnatsakanova, Elena A., Galimov, Yan R., Neretina, Tatiana V., Gerasimov, Evgeny S., Naumenko, Sergey A., Ozerova, Svetlana G., Zalevsky, Arthur O., Yushenova, Irina A., Rodriguez, Fernando, Arkhipova, Irina R., Penin, Aleksey, Logacheva, Maria, Bazykin, Georgii A., Kondrashov, Alexey S.
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W4394405744