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Additional file 6 of Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

Year: 2020

Type: dataset

Abstract: Additional file 6: Table S5. 16S ribosomal RNA amplicon sequencing results. Taxonomic annotations of amplicons in each of the 71 samples using GAST for each taxonomic level: (a) Phylum. (b) Class. (c) Order. (d) Family. (e) Genus. (f) Species. (g) Counts of amplicon sequence variants (ASVs) generated by the MED pipeline in each of the 71 samples. (h) Percent of counts of ASVs in the 71 samples. (i) Taxonomic affiliation of ASVs. (j) Relative abundance estimations for the 16 most abundant genera in our metagenomes based on MED/GAST results, in addition to relative abundance estimations for TM7 and the collection of ASVs not assigned any genus affiliation.

Source: Figshare

DOI: 10.6084/m9.figshare.13467313

Authors: Shaiber, Alon, Willis, Amy D., Delmont, Tom O., Roux, Simon, Lin-Xing Chen, Schmid, Abigail C., Yousef, Mahmoud, Watson, Andrea R., Lolans, Karen, Esen, Özcan C., Lee, Sonny T. M., Downey, Nora, Morrison, Hilary G., Dewhirst, Floyd E., Welch, Jessica L. Mark, Eren, A. Murat

Language: English

Topic: Oral microbiology and periodontitis research

Subfield: Periodontics

Field: Dentistry

Domain: Health Sciences

Open Access status: green

OpenAlex ID: W4394445450

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