Work

TrakEM2 project files and corresponding electron microscopy files for "The architecture of cell differentiation in choanoflagellates and sponge choanocytes"

Year: 2018

Type: dataset

Abstract: TrakEM2 project files and corresponding electron microscopy files Transmission elelectron microscopy serial sections were imported as z-stacks into the Fiji plugin TrakEM2 and automatically aligned using default parameters, except for increasing steps per octave scale to 5 and reducing maximal alignment error to 50 px. Alignments were manually curated and adjusted if deemed unsatisfactory. Organelles and subcellular compartments were manually segmented and 3D reconstructed by automatically merging traced features along the z-axis. Meshes were then preliminarily smoothed in TrakEM2.

Source: Figshare

DOI: 10.6084/m9.figshare.7346750

Authors: Laundon, Davis, Larson, Ben, McDonald, Kent, King, Nicole, Burkhardt, Pawel

Language: English

Topic: Marine Invertebrate Physiology and Ecology

Subfield: Paleontology

Field: Earth and Planetary Sciences

Domain: Physical Sciences

Open Access status: green

OpenAlex ID: W4394534893

Cites:

Cited by:

Related to: 10