Additional file 4: of Transcriptome, proteome and draft genome of Euglena gracilis
Year: 2019
Type: dataset
Abstract: Table S3. Analysis of GO term frequency, domains and large orthogroup architecture. Sheet 1: GO terms in orthogroups. The sheet has two subtables. In one the GO terms represented above 5% in each orthogroup are shown - all other GO terms with less than 5% frequency have been omitted as the numbers of sequences included are very small. The second shows the number of annotated and non-annotated sequences of each taxonomic group selected. Yellow highlight shows the GO terms of interest belonging to molecular process that are analyzed in this study. Sheet 2: Conserved domains from NCBI database (CDD) detected in those sequences with the GO terms of interest highlighted in sheet 1. Output provided by CDD searches. For the sequence identifiers, note that first field separated with “_”, represents the taxonomic group to which it belongs. Sheet 3: Incidence of conserved domains detected in CDD searches and orthogroups. This table summarizes the output of the CDD searches. Gray highlight represents the conserved domains in parallel with the respective orthogroup (OG number) of the sequences for which we provide phylogenetic analyses. Sheet 4: Data for annotation of NCIII tree. Trans-membrane domains and conserved domains. Sheet 5: Data for annotation of REC tree. Trans-membrane domains and conserved domains. (XLSX 127 kb)
Source: Figshare
Authors: ThankGod Ebenezer, Zoltner, Martin, Burrell, Alana, Nenarokova, Anna, Vanclová, Anna Novák, Binod Prasad, Soukal, Petr, Santana-Molina, Carlos, O’Neill, Ellis, Nerissa Nankissoor, Nithya Vadakedath, Daiker, Viktor, Obado, Samson, Silva-Pereira, Sara, Jackson, Andrew, Devos, Damien, Lukeš, Julius, Lebert, Michael, Vaughan, Sue, Vladimίr Hampl, Carrington, Mark, Ginger, Michael, Dacks, Joel, Kelly, Steven, Field, Mark
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W4394553423