Work

Distributed Collaboration for Data, Analysis Pipelines, and Results in Single-Cell Omics

Year: 2024

Type: preprint

Abstract: Single-cell omics data analysis pipelines are complicated to design and difficult to share or reproduce. We describe a web platform that enables no-code analysis pipeline design, simple computing via the Open Science Grid, and sharing of entire data analysis pipelines, their input data, and interactive results. We expect this platform to increase the accessibility and reproducibility of single-cell omics.

Source: bioRxiv (Cold Spring Harbor Laboratory)

DOI: 10.1101/2024.07.30.605714

Authors: Alexandre Hutton, Lizhuo Ai, Jesse G. Meyer

Institutions: Cedars-Sinai Medical Center, Cedars-Sinai Smidt Heart Institute

Language: English

Topic: Scientific Computing and Data Management

Subfield: Information Systems and Management

Field: Decision Sciences

Domain: Social Sciences

Open Access status: green

Funders: National Science Foundation, California Institute for Regenerative Medicine, National Institutes of Health, National Institute of General Medical Sciences

Awards: Partnership to Advance Throughput Computing (PATh), S2I2: Institute for Research and Innovation in Software for High Energy Physics (IRIS-HEP), CIRM Training Program in Translational Regenerative Medicine, G8070815744, Democratizing Multi-Omics to Expedite Discovery of Hidden Metabolic Pathways

OpenAlex ID: W4401112017

Cites: 21

Cited by: 3

Related to: 10