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Collinearity-based Assembly Correction Tool GUI: Software for collinearity-based genome assembly correction

Year: 2024

Type: erratum

Abstract: Genome assembly errors can have a profound effect on downstream analyses. Collinearity-based Assembly Correction Tool GUI is designed to rectify these errors by leveraging collinearity information between the assembled genome and a reference genome. Collinearity-based Assembly Correction Tool GUI provides a user-friendly interface for visualizing and manually correcting assembly errors. It supports various operations such as insertion, deletion, inversion, and swapping of contigs and chromosomes. The software automatically reclusters, relabels, and redraws the assembly after each modification, ensuring that users can easily track changes. Collinearity-based Assembly Correction Tool GUI is a robust tool designed to efficiently correct large-scale assembly errors in polyploid genomes, featuring advanced collinearity detection capabilities.

Source: G3 Genes Genomes Genetics

DOI: 10.1093/g3journal/jkae277

Authors: Shengcheng Zhang, Hejun Du, Xingtan Zhang, Binzhong Wang

Institutions: China Three Gorges Corporation (China), Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences

Language: English

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: gold

Estimated APC paid: $2,790

OpenAlex ID: W4404619318

Cites: 16

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Related to: 10