SSSort 2.0: A semi-automated spike detection and sorting system for single sensillum recordings
Year: 2024
Type: article
Abstract: BACKGROUND: Single-sensillum recordings are a valuable tool for sensory research which, by their nature, access extra-cellular signals typically reflecting the combined activity of several co-housed sensory neurons. However, isolating the contribution of an individual neuron through spike-sorting has remained a major challenge due to firing rate-dependent changes in spike shape and the overlap of co-occurring spikes from several neurons. These challenges have so far made it close to impossible to investigate the responses to more complex, mixed odour stimuli. NEW METHOD: Here we present SSSort 2.0, a method and software addressing both problems through automated and semi-automated signal processing. We have also developed a method for more objective validation of spike sorting methods based on generating surrogate ground truth data and we have tested the practical effectiveness of our software in a user study. RESULTS: We find that SSSort 2.0 typically matches or exceeds the performance of expert manual spike sorting. We further demonstrate that, for novices, accuracy is much better with SSSort 2.0 under most conditions. CONCLUSION: Overall, we have demonstrated that spike-sorting with SSSort 2.0 software can automate data processing of SSRs with accuracy levels comparable to, or above, expert manual performance.
Source: Journal of Neuroscience Methods
Authors: Lydia Ellison, Georg Raiser, Alicia Garrido-Peña, György Kemenes, Thomas Nowotny
Institutions: University of Sussex, Universidad Autónoma de Madrid
Language: English
Subfield: Cellular and Molecular Neuroscience
Field: Neuroscience
Domain: Life Sciences
Open Access status: hybrid
Estimated APC paid: $3,420
OpenAlex ID: W4405564985