Work

Applying the Safe-And-Complete Framework to Practical Genome Assembly

Year: 2024

Type: conference-paper

Abstract: genomes. Our modified algorithms lead to a substantial improvement in alignment-based contiguity, with negligible additional computational costs and either no or a small increase in the number of misassemblies.

Source: PubMed

DOI: 10.4230/lipics.wabi.2024.8

Authors: Schmidt, Sebastian, Toivonen, Santeri, Medvedev, Paul, Tomescu, Alexandru I.

Institutions: University of Helsinki, Pennsylvania State University

Language: English

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: green

Funders: National Science Foundation, European Commission, National Institutes of Health, National Institute of General Medical Sciences

Awards: Frameworks: Re-Engineering Galaxy for Performance, Scalability and Energy Efficiency, CAREER: De Novo Assembly of Large Genomic Data, G434337789, G6224492464, A k-mer-based search engine for sequencing databases, Leveraging k-mer sketching statistics to enhance metagenomic methods and alignment algorithms

OpenAlex ID: W4409962218

FWCI: 3.609

Cites:

Cited by: 2

Related to: 10