Work

A Fragment Based Approach Towards Curating, Comparing and Developing Machine Learning Models Applied in Photo-chemistry

Year: 2025

Type: preprint

Abstract: The development of Graph Neural Networks for the task of predicting molecular properties has gained a great deal of attention as it typically allows the correlation of quick to compute atomic and bond descriptors with overall molecular properties. With the raising interest in photochemistry and photocatalysis as sustainable alternatives to thermal reactions, curation of virtual databases of computed photophysical properties for training of machine learning models has become popular. Unfortunately, current efforts fail to consider the exciton localization onto different chromophores of the same molecule, leading to potentially large prediction errors. Here we describe a molecular fragmentation strategy that can be used to overcome this limitation, while also providing a way to compare structural diversity between different libraries. Using a newly generated a database of 46,432 adiabatic S0-T1 energy gaps (ALFAST-DB), we compare its diversity against two datasets from the literature and demonstrate that a fragment-based delta learning approach improves model generalizability while achieving accuracies matching those of traditional message passing graph neural network architectures (MPGNN)

Source: ChemRxiv

DOI: 10.26434/chemrxiv-2025-l6pb4