Year: 2025
Type: article
Abstract: Nsp15 is an EndoU nuclease that is partially responsible for SARS-CoV-2's ability to evade the immune system response. Despite its importance, the sequence specificity of Nsp15 remains difficult to fully determine. In this work, we use a systematic approach to measure Nsp15's sequence specificity by testing all 16 dinucleotides for cleavage activity. The results show a preference for uridine in the first dinucleotide position, but with varying specificity in the second position. Using Alphafold3 predictions to examine the structural basis of this specificity suggests important contacts 3' of the dinucleotide sequence as well as contacts to the dinucleotides that agree with the cleavage specificity.
Source: RNA Biology
Authors: John V. McGuire, Scott Horowitz
Institution: University of Denver
Language: English
Subfield: Infectious Diseases
Field: Medicine
Domain: Health Sciences
Open Access status: gold
Estimated APC paid: $3,175
Award: G4259357631
OpenAlex ID: W4410129059