Simulations of solvent effects on excited state dynamics of p-DAPA, a red single benzene-based fluorophore
Year: 2025
Type: preprint
Abstract: Fluorescence-based techniques are widely used in basic science and medicine for detecting molecules and probing chemical reactions in vitro and in vivo. Red fluorophores are especially of interest due to their potential applicability for deep-tissue and whole-body imaging with low background interference. The smallest red fluorophore is the benzene-based para-diacetylphenylenediamine (p-DAPA), which has a fluorescence quantum yield of 0.06 and high brightness. However, the effect of solvent type on the photophysical properties of p-DAPA has not been extensively explored. We have employed classical force field dynamics and ab initio Born-Oppenheimer molecular dynamics (BOMD) calculations in explicit solvent to explore the ground and excited state potential energy surfaces of p-DAPA. Our results show that p-DAPA exhibits stronger fluorescence in nonpolar solvents due to the appearance of various new nonradiative decay pathways in polar solvents. This work provides insight into how p-DAPA might be adapted for biological imaging and other applications.
Source: ChemRxiv
Authors: Anita Houston Adams, Alice R. Walker
Institution: Wayne State University
Language: English
Subfield: Physical and Theoretical Chemistry
Field: Chemistry
Domain: Physical Sciences
Open Access status: green
OpenAlex ID: W4410244062