Work

Structural characterisation of nucleotide sugar short‐chain dehydrogenases/reductases from the thermophilic pseudomurein‐containing methanogen Methanothermobacter thermautotrophicus ΔH

Year: 2025

Type: article

Abstract: Epimerases and dehydratases are widely studied members of the extended short‐chain dehydrogenase/reductase (SDR) enzyme superfamily and are important in nucleotide sugar conversion and diversification, for example, the interconversion of uridine diphosphate (UDP)‐linked glucose and galactose. Methanothermobacter thermautotrophicus contains a cluster of genes, the annotations of which indicate involvement in glycan biosynthesis such as that of cell walls or capsular polysaccharides. In particular, genes encoding UDP‐glucose 4‐epimerase related protein ( Mth375 ), UDP‐glucose 4‐epimerase homologue ( Mth380 ) and dTDP‐glucose 4,6‐dehydratase related protein ( Mth373 ) may be involved in the biosynthesis of an unusual aminosugar in pseudomurein. In this paper, we present the structures of Mth375, an archaeal sugar epimerase/dehydratase protein (WbmF) determined to a resolution of 2.0 Å. The structure contains an N‐terminal Rossmann‐fold domain with bound nicotinamide adenine dinucleotide hydride (NADH) and a C‐terminal catalytic domain with bound UDP. We also present the structure for Mth373 co‐crystallised with uridine‐5′‐diphosphate‐xylopyranose to a resolution of 1.96 Å as a NAD + ‐dependent oxidative decarboxylase (UDP‐xylose synthase; EC4.1.1.35 ). Molecular modelling has also allowed for the identification of Mth380 as a UDP‐ N ‐acetylglucosamine 4‐epimerase (WbpP; EC5.1.3.7 ), Mth631 as a UDP‐glucose 4‐epimerase (GalE; EC5.1.3.2 ) and Mth1789 as a classical dTDP‐ d ‐glucose 4,6‐dehydratase ( EC4.2.1.46 ). The UDP–sugar specificity of each archaeal nucleotide sugar short‐chain dehydrogenase/reductase (NS‐SDR) was elucidated via sequence, molecular modelling and structural analyses. Overall, these structures potentially shed light on the formation of the glycan portion of pseudomurein and capsular polysaccharide in Archaea.

Source: FEBS Journal

DOI: 10.1111/febs.70248

Authors: Vincenzo Carbone, Linley R. Schofield, Patrick J. B. Edwards, Andrew J. Sutherland‐Smith, Ron S. Ronimus

Institutions: AgResearch, Massey University

Language: English

Topic: Enzyme Structure and Function

Subfield: Materials Chemistry

Field: Materials Science

Domain: Physical Sciences

Open Access status: hybrid

Estimated APC paid: $5,000

Funders: Royal Society Te Apārangi, Marsden Fund