Year: 2025
Type: preprint
Study design: Observational Study
Abstract: Purpose To systematically investigate the genetic architecture of severe male infertility in Indian men, with a specific focus on chromosomal abnormalities and the contribution of de novo variants. Method We recruited 247 infertile males between 2021 and 2024 presenting with severe quantitative and qualitative sperm defects. All patients underwent karyotyping and Y chromosome microdeletion STS-PCR. A single molecule molecular inversion probe-based targeted sequencing assay covering 39 male infertility genes was performed in 120 patients, while whole exome sequencing (WES) was conducted in 48 patients using a duo/trio-based approach to enable segregation and de novo variant detection. Result Gonosomal aneuploidies were observed in 3/247 patients (1.2%), and causal AZF microdeletions in 8/247 (3.2%). Targeted sequencing identified pathogenic/ likely pathogenic (P/LP) variants in 4/120 patients (3.3%), with additional CFTR variants in 3 patients where parental DNA was unavailable for phasing. WES yielded P/LP variants in 4/48 patients (8.3%) affecting PMFBP1, DNAH1 , and AR genes, confirmed via segregation analysis. No de novo or copy number variants were confirmed as causative, though several candidate genes were prioritised. Sequencing-based approaches provided an additional ~ 6–8% diagnostic yield, with overall diagnostic rate reaching 7.7% (19/247). Conclusion Sequencing-based strategies, particularly family-based trio WES, significantly enhance diagnostic yield beyond current guideline-recommended tests and should be adopted as first-tier investigations for severe male infertility. This represents India’s largest cohort-based genomic study on male infertility to date. Larger family-based cohorts will be essential to delineate the contribution of de novo variants to male infertility genetics.
Source: Research Square
Authors: Harsh Sheth, Preeti Priya, Vineet Mishra, Shrutikaa Kale, Manali Ajagekar, Tejasvi Dhondekar, Manisha Desai, Deepak Modi, Stacy Colaco, Manish Banker, Azadeh Patel, Naresh Bhanushali, Tejanshu Shah, Pankti Jasani, Apurvasinh Puvar, Bilal Kamil Alobaidi, Frenny Sheth, Jayesh Sheth, Joris Andre Veltman
Language: English
Subfield: Reproductive Medicine
Field: Medicine
Domain: Health Sciences
Open Access status: green
OpenAlex ID: W4415741591