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Peer Review Report For: The khmer software package: enabling efficient nucleotide sequence analysis [version 1; peer review: 2 approved, 1 approved with reservations]

Year: 2015

Type: peer-review

Abstract: The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. khmer provides implementations of a probabilistic k-mer counting data structure, a compressible De Bruijn graph representation, De Bruijn graph partitioning, and digital normalization. khmer is implemented in C++ and Python, and is freely available under the BSD license at https://github.com/dib-lab/khmer/ .

Source: F1000Research

DOI: 10.5256/f1000research.7456.r10508

Author: Patro, Rob

Language: English

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: gold

Estimated APC paid: $1,350

Funders: U.S. Department of Agriculture, Gordon and Betty Moore Foundation, National Institutes of Health, National Institute of Food and Agriculture

Awards: G177123629, C. Titus Brown Investigator Award

OpenAlex ID: W4416625343

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