Peer Review Report For: BioHackathon 2015: Semantics of data for life sciences and reproducible research [version 1; peer review: 2 approved]
Year: 2020
Type: peer-review
Abstract: We report on the activities of the 2015 edition of the BioHackathon, an annual event that brings together researchers and developers from around the world to develop tools and technologies that promote the reusability of biological data. We discuss issues surrounding the representation, publication, integration, mining and reuse of biological data and metadata across a wide range of biomedical data types of relevance for the life sciences, including chemistry, genotypes and phenotypes, orthology and phylogeny, proteomics, genomics, glycomics, and metabolomics. We describe our progress to address ongoing challenges to the reusability and reproducibility of research results, and identify outstanding issues that continue to impede the progress of bioinformatics research. We share our perspective on the state of the art, continued challenges, and goals for future research and development for the life sciences Semantic Web.
Source: University of Southampton
Authors: Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul J. P. Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin B. Cohen, Eric W. Deutsch, Jesualdo T. Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy Nguyen-Xuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
Institutions: Leiden University, Naturalis Biodiversity Center, Database Center for Life Science, Nagasaki University, European Bioinformatics Institute, National Institute of Genetics, Chinese Academy of Sciences, Shenzhen Institutes of Advanced Technology, Curoverse (United States), Norwegian University of Science and Technology, Soka University, Keio University, SIB Swiss Institute of Bioinformatics, National Institutes of Health, National Center for Biotechnology Information, Istituto Nazionale Genetica Molecolare, Dutch Techcentre for Life Sciences, National Institute for Basic Biology, National Institutes of Natural Sciences, Centre National de la Recherche Scientifique, Université Paris-Saclay, Laboratoire d'Informatique pour la Mécanique et les Sciences de l'Ingénieur, University of Colorado Anschutz, University of Colorado Denver, Institute for Systems Biology, Instituto Murciano de Investigación Biosanitaria, Universidad de Murcia, RIKEN Center for Sustainable Resource Science, Universidad Politécnica de Madrid, The University of Osaka, Garvan Institute of Medical Research, UNSW Sydney, Malaysia Genome Institute, ST Engineering (Singapore), King Abdullah University of Science and Technology, Tokyo Institute of Technology, Hitachi (Japan), Japan Science and Technology Agency, Justus-Liebig-Universität Gießen, Noguchi Institute, National Cancer Centre Japan, National Institute of Biomedical Innovation, Health and Nutrition, Lawrence Berkeley National Laboratory, RIKEN, Tohoku University, Tohoku Medical Megabank Organization, Niigata University, University of California, Santa Cruz, University of Tennessee Health Science Center, University Medical Center Utrecht, Scripps Research Institute, Kyoto University, RIKEN BioResource Research Center, Leiden University Medical Center, Queen Mary University of London, The University of Tokyo, Maastricht University
Language: English
Subfield: Information Systems
Field: Computer Science
Domain: Physical Sciences
Open Access status: green
OpenAlex ID: W4416630882
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