Peer Review Report For: The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms [version 1; peer review: 1 approved, 3 approved with reservations]
Year: 2022
Type: peer-review
Abstract: In October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on structural variants (SVs) by prototyping and iterating on open-source software. This led to nine hackathon projects focused on diverse genomics research interests, including various SV discovery and genotyping methods, SV sequence reconstruction, and clinically relevant structural variation, including SARS-CoV-2 variants. Repositories for the projects that participated in the hackathon are available at https://github.com/collaborativebioinformatics.
Source: F1000Research
Authors: Kimberly Walker, Divya Kalra, Rebecca Lowdon, Guangyi Chen, David Molik, Daniela C. Soto, Fawaz Dabbaghie, Ahmad Al Khleifat, Medhat Mahmoud, Luis F Paulin, Muhammad Sohail Raza, Susanne P. Pfeifer, Daniel Paiva Agustinho, Elbay Aliyev, Pavel Avdeyev, Enrico R. Barrozo, Sairam Behera, Kimberley Billingsley, Li Chuin Chong, Deepak Choubey, Wouter De Coster, Yilei Fu, Alejandro R. Gener, Timothy Hefferon, David Morgan Henke, Wolfram Höps, Anastasia Illarionova, Michael D. Jochum, Maria Jose, Rupesh K. Kesharwani, Sree Rohit Raj Kolora, Jędrzej Kubica, Priya Lakra, Damaris Lattimer, Chia-Sin Liew, Bai-Wei Lo, Chunhsuan Lo, Anneri Lötter, Sina Majidian, Suresh Kumar Mendem, Rajarshi Mondal, Hiroko Ohmiya, Nasrin Parvin, Carolina Peralta, Chi-Lam Poon, Ramanandan Prabhakaran, Marie Saitou, Aditi Sammi, Philippe Sanio, Nicolae Sapoval, Najeeb Syed, Todd Treangen, Gaojianyong Wang, Tiancheng Xu, Jianzhi Yang, Shangzhe Zhang, Weiyu Zhou, Fritz J Sedlazeck, Ben Busby
Institutions: Baylor College of Medicine, Helmholtz Institute for Pharmaceutical Research Saarland, Saarland University, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, University of California, Davis, Düsseldorf University Hospital, King's College London, Chinese Academy of Sciences, Beijing Institute of Genomics, Arizona State University, Washington University in St. Louis, Sidra Medical and Research Center, George Washington University, National Institutes of Health, National Institute on Aging, Bezmiâlem Vakıf Üniversitesi, Savitribai Phule Pune University, University of Antwerp, VIB-UAntwerp Center for Molecular Neurology, Rice University, Centers for Disease Control and Prevention, National Center for Biotechnology Information, European Molecular Biology Laboratory, German Center for Neurodegenerative Diseases, Pondicherry University, University of California, Berkeley, University of Warsaw, University of Delhi, University of Applied Sciences Upper Austria, University of Nebraska–Lincoln, University of Konstanz, National Institute of Genetics, University of Pretoria, University of Lausanne, Indian Council of Agricultural Research, National Institute Of Veterinary Epidemiology And Disease Informatics, University of Burdwan, Medical & Biological Laboratories (Japan), Max Planck Institute for Evolutionary Biology, Weill Cornell Medicine, Norwegian University of Life Sciences, Indian Institute of Technology BHU, Max Planck Institute for Molecular Genetics, University of Southern California, University of St Andrews, George Mason University, DNAnexus (United States)
Language: English
Subfield: Genetics
Domain: Life Sciences
Open Access status: gold
Estimated APC paid: $1,350
OpenAlex ID: W4416645593