P69 Computational drug-target interaction of antibacterial compounds from Streptomyces chrestomyceticus ADP4
Year: 2025
Type: conference-abstract
Abstract: Objectives To evaluate the drug-target interaction of the antibacterial compounds from the Streptomyces chrestomyceticus ADP4. Methods Staphylococcus aureus is of the WHO priority pathogen, causative agent for multiple soft tissue and skin infections, gastroenteritis etc. making it a suitable candidate for investigation of the drug target based studies. Computational biology has emerged as promising, sustainable and efficient technique for shortlisting, screening and to predict drug target interaction and possible antibacterial mechanisms involved. The study involves molecular docking studies of compounds with the bacterial antibacterial targets of S. aureus which includes topoisomerase, metabolic enzymes such as malate dehydrogenase, dihydrofolate reductase etc. The protein structures were collected from protein data bank and homology models were constructed using templates with high sequence identity to get reliable 3D structure. The blind docking was performed using the PyRx software using the AutoDock Vina. Molecular dynamic (MD) simulation analysis was carried out using GROMACS tool. The drug-target complexes were screened and selected based on the threshold binding energy from molecular docking. The trajectory obtained from MD simulation were analysed for the time dependent interaction, conformational changes, stability, residue flexibility, compactness, solvent accessible surface area (SASA) of the drug- target complexes. Results Molecular Docking analysis showed that the compounds interact and bind with target enzyme with intermediate binding affinity upto-7kcal/mol with decent stability and interaction in MD analysis. It further indicates the compounds as promising antibacterial agents with further scope of lead optimization for better antimicrobial potential. Conclusions The study also highlights on the mode of action of the compounds by predicting the inhibition of the key metabolic enzymes and therefore metabolic pathways leading to bactericidal activity. This approach helps fast tracking the drug discovery initiatives time bound and early stage identification of the antimicrobial molecules.
Source: JAC-Antimicrobial Resistance
Authors: Aakash Kumar, A K Dubey
Institution: Netaji Subhas University of Technology
Language: English
Subfield: Computational Theory and Mathematics
Field: Computer Science
Domain: Physical Sciences
Open Access status: gold
Estimated APC paid: $2,609
OpenAlex ID: W4416971430
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