Year: 2025
Type: conference-paper
Abstract: Gene expression in response to stimuli is regulated by transcription factors (TFs) through feedback loop motifs, aimed at maintaining the desired TF concentration despite uncertainties and perturbations. In this work, we consider a stochastic model of the positive gene autoregulating feedback loop and we probabilistically quantify its resilience, i.e., its ability to preserve the equilibrium associated with a prescribed concentration of TFs, and the corresponding basin of attraction, in the presence of noise. We show that the formation of larger oligomers, corresponding to larger Hill coefficients of the regulation function, and thus to sharper non-linearities, improves the system resilience, even close to critical concentrations of TFs. We also explore a complementary definition of resilience that can be assessed within a stochastic formulation relying on the Fokker-Planck equation. Our formal results are accompanied by numerical simulations.
Authors: Daniele Proverbio, Giulia Giordano
Institution: University of Trento
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W4417408341
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