Work

Image Analysis using Galaxy

Year: 2025

Type: article

Abstract: GloBIAS seminar series Part 3 in the topic: Infrastructure for deploying image analysis workflows Image analysis using Galaxy Beatrix Serrano-Solano, Euro-BioImaging ERIC Bio-Hub, EMBL Heidelberg, Germany & Anne Fouilloux , Simula Research Laboratory, Oslo, Norway & Leonid Kostrykin, Biomedical Computer Vision Group, Heidelberg University, BioQuant, IPMB, Heidelberg, Germany & Ricardo Massei, Helmholtz Center for Environmental Research, UFZ, Leipzig, Germany Abstract: This webinar will introduce the Galaxy Image Analysis Community and highlight our mission to advance the development of FAIR and reproducible image analysis workflows. As part of our commitment to making image data analysis more accessible and collaborative, we will showcase how Galaxy can serve the imaging community. The session will explore Galaxy’s capabilities for integrating popular image analysis tools, interactive environments, and notebooks, making it a versatile platform for researchers across various scientific domains. We will also present how Galaxy facilitates the creation and sharing of reusable workflows, promoting open science and fostering collaboration. To give participants hands-on insight, we’ll provide a live demonstration on designing and running image analysis workflows within Galaxy.

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.14944039

Authors: Serrano-Solano, Beatriz, Kostrykin, Leonid, Fouilloux, Anne, Massei, Riccardo

Institutions: Euro-BioImaging ERIC, Heidelberg University, Simula Research Laboratory

Language: English

Topic: Scientific Computing and Data Management

Subfield: Information Systems and Management

Field: Decision Sciences

Domain: Social Sciences

Open Access status: green

Funder: European Commission

Awards: FAIR to Adapt to Climate Change, O.S.C.A.R.S. - Open Science Clusters’ Action for Research and Society