Supplementary information for "Factors influencing the accuracy and precision in dating single gene trees"
Year: 2024
Type: supplementary-materials
Abstract: Supplementary Figures, Tables, and Material and Methods for the main article “Factors influencing the accuracy and precision in dating single gene trees” (https://doi.org/10.1101/2020.08.24.264671v7) Table of contents 21 species Primate tree with median branch lengths (Figure). Complete list of the 56 input features for the regression (Table). Alternative regression to the one in the main text (Figure, Result). Enriched human gene annotations from the set with lowest predicted dispersion (Figure, Result). Enriched human gene annotations from the set of genes with longest alignment (Figure, Result). Observed distributions of the simulated parameters in the Primates gene trees (Figure) Sampling from the prior of the Beast model (Figure). Species and gene trees preprocessing (Methods). Program versions (Methods). Beast clock model parameters VS rate summary statistics (Figure). Feature transformations (Table, Methods). Aberrant gene trees (35), removed prior to the regression (Table, Methods). Detailed outputs and parameters of the regression of per-tree error (Table). Observed distribution of Kappa (transitions/transversions) in the Primates gene trees (Figure) Number of trees having one or more variable with ESS<200 (Table).
Authors: Louvel, Guillaume, ROEST CROLLIUS, Hugues
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W6911865280