Work

Dominant strain gut microbiome phylogenies

Year: 2025

Type: report

Abstract: We assessed 32,152 gut metagenomics samples from 24,829 individuals. These were mainly European samples (65%), largely due to the contribution of datasets from individuals of Dutch origin (35% total), with 15.8% from North America, 14.3% from Asia, 3.83% from Africa, and 0.5% from Oceania and South America. Using StrainPhlAn4, we reconstructed the phylogeny of the 1,660 species-level genome bins for which enough samples with sufficient coverage were available. Important: Please mind that the metadata file here provide does not contain the complete metadata used in the study, but a combination of metadata available through curatedMetagenomicData. To get access to the rest of the metadata, please see the section 'Data and code availability' in the corresponding article.

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.14651411

Authors: Andreu-Sánchez, Sergio, Segata, Nicola

Institutions: University Medical Center Groningen, University of Trento, European Institute of Oncology

Language: English

Topic: Gut microbiota and health

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

SDG: Good health and well-being

Open Access status: green

OpenAlex ID: W6912110104

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