The E. coli PeptideAtlas Build: Characterizing the observed Escherichia coli Pan-proteome and its post-translational modifications
Year: 2025
Type: article
Abstract: Suppl_Table_1_Project_and_Run_Metadata: Metadata on project level and run level (SDRF). Suppl_Table_2_exp_contrib_table.tsv: List of all included projects and how they were split up into experiments, also includes metadata and identification rate statistics. Identical to the list that is shown on the build webpage. Suppl_Table_3_Modification_Sites.tsv: Mass shifts, Unimod names, classifications, and modified residues of the modification sites uniquely mapping to a canonical protein in the build. Note that for the position in the protein, placeholder values were used for protein C- and N-terminal modifications. Suppl_Table_4_PSMs.tsv: All PSMs integrated in the PeptideAtlas build. ecoli-peptideatlas-main.zip: Code freeze of the scripts used to create the manuscript figures, downloaded 28/07/2025
Author: Jachmann, Caroline
Institutions: Ghent University, VIB-UGent Center for Medical Biotechnology
Language: English
Subfield: Spectroscopy
Field: Chemistry
Domain: Physical Sciences
Open Access status: green
OpenAlex ID: W7081148632
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