SVUPP: Structural Variants Genotyping Using Pre-Phased Reads
Year: 2025
Type: article
Abstract: Here we uploaded the source code of relevant software in our paper. * `SVUPP.zip` is the Nextflow pipeline. The guideline of running SVUPP can be found on Github https://github.com/Zilong-Li/SVUPP. * `svupp.sif` is the Sigularity image that has all dependencies, such as QUILT2 and the modified version of cuteSV2. * `cuteSV.zip` is the source code of modified version of cuteSV v2.1.1. We will continue uploading assessment results and reproducible scripts.
Author: Li, Zilong
Language: English
Subfield: Genetics
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W7083837715
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