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Systematic Detection of Oxford Nanopore Adapter and Barcode Contamination in GenBank – Data and Code Release

Year: 2025

Type: article

Abstract: This Zenodo record is versioned. The DOI provided corresponds to the concept DOI and always resolves to the most recent version of the dataset that contains the full data and code release for “Systematic Detection of Oxford Nanopore Adapter and Barcode Contamination in GenBank”. It includes the non-redundant catalogue of 229 ONT adapter/barcode sequences, filtered BLAST hit tables, accession-level annotations, and summary presence matrices, together with scripts to reproduce all analyses and generate the consolidated Excel outputs. The source code is also available on GitHub at https://github.com/MERIDAIN-Lab/ONT_NCBI_contamination.

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.17409926

Author: Martino, Florencia

Language: English

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: green

Funders: National Institutes of Health, National Institute on Drug Abuse

Awards: Molecular Networks and Deep Learning for Targeted HIV Interventions among PWID, Leveraging the plasma virome as a biological indicator of HIV risk and transmission networks among people who inject drugs

OpenAlex ID: W7117247684

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