Work

BRYOMOLECULES - D3.2 Assemblies of 90 bryophyte transcriptomes

Year: 2025

Type: article

Abstract: In this deliverable we provide data referencing the assemblies of 102 bryophyte transcriptomesgenerated on the Illumina platform. The sequences are deposited in the Bryomoleculesrepository (currently accessible for project review purposes only).The accompanying table reports in column 1 the BRYOMOLECULES assembly ID definedaccording to FAIR Data principles, in column 2 the corresponding NCBI Biosample ID and incolumn 3 the internal BRYOMOLECULES accession number. Columns 4, 5 and 6 report the N50,count and length values for the assembly carried out with the Trinity software, while columns 7,8 and 9 report the N50, count and length values for the assembly carried out with the rnaSpadessoftware, respectively.The N50 value is the length (in base pairs) of the shortest contig that, when summed with all longercontigs, reaches 50% of the total assembly size. The count is the total number of contigs in therespective assembly, while the length is the sum of the lengths (in base pairs) of all contigs in therespective assembly. Do you want to know more about BRYOMOLECULES? Visit our project website: https://bryomolecules.eu

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.18221416

Author: Varotto, Claudio

Institution: Fondazione Edmund Mach

Language: English

Topic: Bryophyte Studies and Records

Subfield: Ecology, Evolution, Behavior and Systematics

Field: Agricultural and Biological Sciences

Domain: Life Sciences

Open Access status: green

Funder: European Commission

Award: Bioprospecting and production of bioactive molecules from European bryophytes