Use of Substrate Analogues and X-ray spectroscopy Reveals an all Ferrous C-Cluster in CO Dehydrogenase
Year: 2026
Type: preprint
Abstract: Carbon monoxide (CO) dehydrogenase (CODH) plays a key role in prokaryotic one-carbon metabolism by detoxifying CO and by driving CO 2 reduction coupled to ATP production in the Wood-Ljungdahl Pathway. Here we focus on a Ni-Fe CODH (CODH-II), with an active site C-cluster, which is a [NiFe 4 S 4 ] cluster arranged as a [NiFe 3 S 4 ] subcluster with an additional, unique pendant Fe, e.g., [Fe 3 S 4 -Fe u ]. It catalyzes the reversible reduction of CO 2 to CO without the requirement for an overpotential and with insignificant proton reduction. The redox states associated with catalysis are defined as C red1 and C red2 . Despite crystal structures with near 1.0 A resolution, it has been a long-standing question where the electrons in these catalytically relevant redox states are stored within the C cluster. Using X-ray absorption spectroscopy (XAS), EPR, and substrate-analogue binding measurements, we clarify the electronic structure of these catalytically active states in addition to the resting state of CODH. We rule out recent postulates that catalysis involves a Ni 0 state, a metal-metal bond, or a hydride intermediate. We reveal that CODH rests in the diamagnetic C ox form, which contains Ni 2+ and an oxidized [Fe 3 S 4 -Fe u ] 2+ cluster. Then, the C-cluster undergoes reductive activation on Fe to form paramagnetic Cred1, which binds CO and analog cyanide. Generation of C red2 , which binds CO 2 and its analog cyanate, involves two sequential valence-localized electron transfers, generating Ni 1+ and then [Fe 3 S 4 -Fe u ], forming an all-ferrous cluster. Our work sheds light on how CODH avoids the thermodynamically unfavorable generation of a CO 2 radical anion intermediate formed in other catalytic systems by stabilizing electron density in the heterometallic C-cluster. We also highlight the importance of high-resolution XAS and use of substrate analogs to reveal the sequential, valence-localized electron transfers that occur during redox-dependent CODH catalysis. TOC Figure
Language: English
Field: Energy
Domain: Physical Sciences
Open Access status: green
Awards: G1286251239, G1831385526, G2109353418, G2300450775, G2371548206, G303061748, G315621713, G3488436650, G3629260272, G3824574848, G4581610328, G5570207115, G6550344761, G7283024673, A Synchroton Radiation Structural Biology Resource, G8925327636, G9000069621, G9000127848, Metalloprotein Mechanisms of Redox Regulation and Catalysis, G911061179, G969889393
OpenAlex ID: W7125510716