Work

broadinstitute/viral-ngs: 3.0.0

Year: 2015

Type: software

Abstract: A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be found at http://viral-ngs.readthedocs.org/ This includes installation instructions, usage instructions for the command line tools, and usage of the pipeline infrastructure. v1.14.0 Release Notes New: read_utils.align_and_fix() now has an option--skipMarkDupes since samtools depth can segfault if if duplicate reads are marked reports.align_and_plot_coverage() can now use Novoalign as the aligner rather the default BWA mem Fixed: align_rna memory raised to 36 GB in Snakemake pipeline metagenomics.coverage_lca() is now hardened to missing taxids Changed/Updated: For align_rna, "sensitive" option is now disabled by default for BWA mem pytest 2.9.1 -> 3.0.5

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.593588

Authors: Daniel Park, Chris Tomkins-Tinch, Simon Ye, Irwin Jungreis, Ilya Shlyakhter, Hayden Metsky, Hanna, Cesar Arze, Mike Lin, Flavia, Aaron Lin, Vang Le, Laura Luebbert, Ph.D., Katrin Leinweber, Lydia Andreyevna Krasilnikova, pvanheus

Institutions: Broad Institute, Massachusetts Institute of Technology, Merck & Co., Inc., Rahway, NJ, USA (United States), Novo Nordisk (Denmark)

Language: German

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: green

OpenAlex ID: W6893846798

Cites:

Cited by: 21

Related to: 9