Additional file 1: Figures S1-S3 and Tables S1-S9. of The gut microbiota in conventional and serrated precursors of colorectal cancer
Year: 2016
Type: article
Abstract: Figure S1. Principal coordinate analysis (PCoA) of the unweighted and weighted UniFrac distances for quality control stool specimens. Figure S2. Rarefaction curves of richness and the Shannon index. Figure S3. Count heatmap of top 20 OTUs contributing the most to the Dirichlet components of the Dirichlet multinomial mixture model. Table S1. Quality control intra‐class correlation coefficients (ICCs) and 95% CIs for the Shannon index and normalized counts of selected phyla and genera. Table S2. Number of participants with polyp(s) in the specified colon locations, stratified by assignment into case type and polyp location groupings used in analysis. Table S3. Richness and Shannon diversity index by group. Table S4. Differentially abundant OTUs between controls and conventional adenoma cases, hyperplastic polyp cases, or SSA cases. Table S5. Differentially abundant taxa (phylum‐genus levels) between controls and conventional adenoma cases, hyperplastic polyp cases, or SSA cases. Table S6. Differentially abundant taxa (phylum‐OTU level) between controls and proximal or distal conventional adenoma cases. Table S7. Differentially abundant taxa (phylum‐OTU level) between controls and non‐advanced or advanced conventional adenoma cases. Table S8. Sensitivity analysis—excluding participants (n = 5) who collected their stool sample <2 weeks after their colonoscopy. Table S9. Sensitivity analysis—excluding participants (n = 19 from the NYU study) who had taken antibiotics within 30 days prior to sample collection (antibiotic usage information was not available in the CDC study). (PDF 631 kb)
Source: Figshare
Language: English
Topic: Gut microbiota and health
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W7136065248