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Additional file 1: Figure S1. of Normalization and microbial differential abundance strategies depend upon data characteristics

Year: 2017

Type: article

Abstract: Comparison of common distance metrics and normalization methods when low-coverage samples are excluded. The right axis represents the median library size (NL), while the x-axis effect size is the multinomial mixing proportions of the two classes of samples, ocean and feces. For rarefying, samples below the 15th percentile of library size were dropped from the analysis. See caption for Fig. 2 for further details. (PDF 432 kb)

Source: Figshare

DOI: 10.6084/m9.figshare.4720768

Authors: Weiss, Sophie, Xu, Zhenjiang, Peddada, Shyamal, Amir, Amnon, Bittinger, Kyle, Gonzalez, Antonio, Lozupone, Catherine, Zaneveld, Jesse, VĂĄzquez-Baeza, Yoshiki, Birmingham, Amanda, Hyde, Embriette, Knight, Rob

Language: English

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: green

OpenAlex ID: W7136056447

FWCI:

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