Additional file 8: Figure S5. of Comparative paleovirological analysis of crustaceans identifies multiple widespread viral groups
Year: 2015
Type: article
Abstract: Schematic representation of the three EVE loci that are orthologous between the various Armadillidium species. The plain green portion of the loci are similar to a virus. a) A. nasatum Bunyavirus-like EVE 12 is most similar to the Wuhan insect virus 1 RdRp (AJG39261). Its 3’ flank contains a 103-bp interspersed repeat (IR in blue) which is repeated at least 66 times in the A. nasatum genome (average similarity between repeats = 86 %) and a partial ORF similar to a hypothetical protein from Helobdella robusta (in grey). b) A. nasatum Circovirus-like EVE 44 is most similar to the Dragonfly orbiculatus virus rep protein (AFS65301). Its 5’ and 3’ flank contain a dinucleotide microsatellite (in orange) repeated at least 15 and 6 times respectively, that are shared at the exact same position with A. vulgare. c) A. nasatum Circovirus-like EVE 50 is most similar to the rep protein of an Uncultured marine virus (GAC77817).xIts 3’ flank contains a 130-bp interspersed repeat which is repeated at least 13 times in the A. nasatum genome (average similarity between repeats = 91 %), as well as a trinucleotide microsatellite repeated at least 17 times and shared with A. vulgare. The green portions of the loci with slanted black stripes correspond to the rest of the flanking regions, which are not similar to any known sequence. Red arrows indicate the position of forward and reverse PCR primers. (PDF 393 kb)
Source: Figshare
Language: English
Subfield: Plant Science
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W7137327100