Additional file 3: Figure S1. of ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly
Year: 2015
Type: article
Abstract: Performance comparison for indel detection with 200-bp simulated reads. Recall (upper panel) and precision (lower panel) are evaluated for ScanIndel, GATK HaplotypeCaller, Pindel, Platypus, Scalpel, Delly and FermiKit. Smoothed histograms (100-bp bins) show the comparison on simulated data of 10×, 20× and 50× mean coverage for detecting 1000 deletions and 1000 insertions, one each from the size range 1 bp to 1 kb. Precision is not calculated if a zero denominator (TP + FP = 0) is given by the method. (PDF 26 kb)
Source: Figshare
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W7136847758