Azotobacter vinelandii AmrZ is a global regulator linking alginate production and c-di-GMP homeostasis
Year: 2026
Type: article
Abstract: Azotobacter vinelandii , a member of the Pseudomonadaceae, produces the exopolysaccharide alginate during vegetative growth; however, the circuitry linking alginate biosynthesis to lifestyle transitions remains poorly defined. Here we show that the Ribbon–Helix–Helix (RHH) transcription factor AmrZ coordinates alginate production, intracellular c-di-GMP levels, and motility. Deletion of amrZ abolished alginate synthesis, whereas chromosomal complementation restored it. A P algD-gusA fusion and RT-qPCR demonstrated that algD , the first gene in the alginate biosynthetic cluster, depends on AmrZ for expression. Motif analysis identified multiple AmrZ sites upstream of algD , and electrophoretic mobility-shift assays (EMSAs) confirmed specific binding to these regions. AmrZ also positively autoregulates: PamrZ-gusA activity decreased in Δ amrZ , and purified AmrZ bound the amrZ promoter in EMSA. Moreover, P amrZ activity required the sigma factor AlgU, consistent with the presence of an AlgU promoter; this positive, AlgU-dependent feedback may stabilize AmrZ under alginate-inducing conditions. To probe AmrZ control of c-di-GMP, we implemented a riboswitch-based biosensor in A. vinelandii . The Δ amrZ strain showed a markedly reduced signal, similar to a diguanylate cyclase (DGC) mutant; whereas a phosphodiesterase (PDE) mutant displayed elevated output, validating the assay. RNA-seq and RT-qPCR identified two DGC genes, AVAEIV_RS11610 and AVAEIV_RS18795, as AmrZ-activated targets; EMSA verified direct binding at the RS11610 regulatory region. By contrast, transcription of the principal vegetative DGC AvGreg was not AmrZ-regulated. Lower c-di-GMP in Δ amrZ correlated with larger swimming halos. Collectively, these genetic, biochemical, and transcriptomic data support a model in which AmrZ directly activates algD and elevates c-di-GMP via selected DGCs, thereby promoting alginate synthesis while reducing motility. RNA-seq data also indicate that AmrZ influences broader cellular programs, including metabolism and ion homeostasis, positioning AmrZ as a central regulator that links c-di-GMP homeostasis to coordinated exopolysaccharide production in A. vinelandii .
Source: Microbiology
DOI: 10.1099/mic.0.001686
Authors: Miriam Citlalli Gonzaga-Pérez, Carlos Leonel Ahumada-Manuel, Ana Isabel Chávez-Martínez, Josefina Guzman, Karel Estrada, Guadalupe Espín, Cinthia Núñez
Institution: Universidad Nacional Autónoma de México
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: diamond
Award: G6478607662
OpenAlex ID: W7140200672