Work

Molecular Dynamics simulations of nucleosome containing an individual nick in a solvent exposed orientation at SHL0, SHL−2, SHL−4, and SHL−6

Year: 2026

Type: dataset

Abstract: MD trajectories of the nucleosome core particle containing an individual nick in a solvent exposed orientation at SHL0, SHL−2, SHL−4, and SHL−6 and control sequence with undamaged DNA. All the topology files are given in amber format. Trajectory files for: the three replicas of 1 microsecond each for each system. Files are called accordingly to the nick position, ND_NCP corresponds to the undamaged nucleosome. 1 frame = 1 ns, water and ions were removed.

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.19235695

Authors: Emmanuelle, BIGNON, Gillet, Natacha, Weaver, Tyler

Institutions: Laboratoire de Physique et Chimie Théoriques, Laboratoire de Chimie, University of Virginia

Language: English

Topic: Protein Structure and Dynamics

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: green

OpenAlex ID: W7143304371

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