Work

Salmon Streamer: A Comprehensive Pipeline for RNA-seq to QTL Analysis

Year: 2025

Type: software

Abstract: A complete bioinformatics pipeline for RNA-seq data analysis, from initial quantification through genotype/phenotype processing and QTL input preparation. The pipeline integrates multiple tools and analysis steps into a unified command-line interface, enabling allele-specific expression analysis, genotype calling from transcript mapping data, and automated QTL analysis preparation.

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.15800355

Authors: Madrigal-Roca, Luis Javier, Veltsos, Paris, Kelly, John K.

Institutions: University of Kansas, Vrije Universiteit Brussel

Language: English

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: green

OpenAlex ID: W6930756010

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