Effects of Substituted Tryptamines on the Excitonic Structure of the Tubulin Tryptophan Network
Year: 2026
Type: article
Abstract: Microtubules contain ordered aromatic amino-acid networks whose optical excitations have been proposed to support non-trivial energy-transfer dynamics. Here, we examined whether bound tryptamine ligands can perturb the excitonic structure of the tubulin tryptophan network. A virtual screen of 294 tryptamines was performed across seven known binding regions of the tubulin heterodimer using AutoDock Vina. From this screen, top-ranked tryptamine ligands were carried forward for excited-state analysis. Geometry optimization and time-dependent density functional theory (TD-DFT) calculations were used to obtain vertical excitation energies and transition dipole moments for the ligand-bound states in the ultraviolet range. These ligand properties were then incorporated into a tight-binding Hamiltonian describing the tubulin tryptophan excitation network in order to evaluate changes in exciton energies and eigenvector delocalization. The calculations indicate that tryptamine binding can modify the excitonic landscape of tubulin in a ligand-dependent manner, with the magnitude of the perturbation governed by excitation wavelength, transition dipole strength, and spatial orientation relative to the intrinsic tryptophan network. These results support the possibility that aromatic ligands may provide a chemically tunable route to altering the optical response of tubulin and motivate future experimental tests of ligand-dependent modulation of microtubule photophysics.
Source: Photonics
Institution: University of Waterloo
Language: English
Subfield: Atomic and Molecular Physics, and Optics
Field: Physics and Astronomy
Domain: Physical Sciences
Open Access status: gold
Estimated APC paid: $2,896
Funder: Canada Research Chairs
Award: G2183256082
OpenAlex ID: W7166720739