Work

Web Application for DPCfam and DPCstruct Data Exploration

Year: 2026

Type: article

Abstract: Slides presenting the MDMC master's thesis project DPCexplorer, a Django web application for the interactive exploration of the DPCfam and DPCstruct protein domain classifications. The content introduces the annotation gap that motivates the work, explains how the two unsupervised datasets were preprocessed on the ORFEO HPC cluster and served from a PostgreSQL database, and walks through the main features of the platform: the four query types, the per-protein domain-architecture diagram, the downloadable biological files (FASTA, MSA, HMM, PDB), and the embedded PDBe-Molstar (Mol*) 3D viewer. Aligned with software release v1.0.3.

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.20850391

Author: Nyandu Kagarabi, Emmanuel

Institutions: Scuola Internazionale Superiore di Studi Avanzati, AREA Science Park

Language: English

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: green

Funder: European Commission

Awards: G1649600815, G7604540477