Clinical, Transcriptional and Haplotype Characterization of Recurrent MYBPC3 Splice-Site Variants c.1458-1G>A and c.3331-1G>A Associated with Hypertrophic Cardiomyopathy in Northern Italy
Year: 2026
Type: article
Study design: Observational Study
Abstract: Background: Founder mutations in MYBPC3 may contribute substantially to the genetic burden of hypertrophic cardiomyopathy (HCM) and provide important insights into genotype–phenotype correlations and population-specific disease mechanisms. In this study, we investigated two recurrent canonical splice-site variants, MYBPC3 c.1458-1G>A and c.3331-1G>A, identified in patients with HCM from the Emilia-Romagna region of Northern Italy. Methods: Ninety-one unrelated patients with HCM carrying either MYBPC3c.1458-1G>A or c.3331-1G>A were analyzed. Haplotype reconstruction was performed to assess a possible founder effect and estimate the approximate age of the shared ancestral allele. Functional characterization was carried out by RNA sequencing of myocardial tissue to evaluate the impact of the variants on splicing. Clinical and phenotypic data were compared with those of carriers of other truncating MYBPC3 variants or pathogenic variants in other sarcomeric genes. Results: Both variants, classified as pathogenic according to ACMG criteria, shared a conserved variant-specific core haplotype. Founder age was estimated at approximately 10.5 generations (~262 years), consistent with a regional founder effect. RNA sequencing demonstrated aberrant splicing for both variants, resulting in premature termination codons and presumably subsequent nonsense-mediated mRNA decay. Clinically, carriers showed delayed disease onset, with a mean onset in the fifth decade of life, and a comparatively milder phenotype, including a lower incidence of sudden cardiac death, than patients carrying other truncating MYBPC3 variants or pathogenic variants in other sarcomeric genes. Both variants exhibited partial penetrance (approximately 63–67%) and age-dependent variable expressivity. Conclusions:MYBPC3 c.1458-1G>A and c.3331-1G>A represent novel founder alleles associated with HCM in Northern Italy. Identification of these locally prevalent variants improves molecular diagnosis, family screening, and supports the development of variant-targeted therapeutic approaches.
Source: Genes
Authors: Carlotta Pia Cristalli, Maria Alessandra Schiavo, Miryam Rosa Stella Foti, Sara Calabrese, Federica Isidori, Alice Margutti, Pierluigi Laricchiuta, Giulia Governatori, Francesco Lai, Vera Uliana, Federico Barocelli, Elia De Maria, Alessandro Fucili, Biagio Sassone, Giulia Parmeggiani, Enrica Perugini, Camilla Lucca, Francesca Cappuccini, Laura Pezzoli, Maria Iascone, Maria Piane, Giovanni Vitale, Claudio Graziano, Rita Selvatici, Alessandra Ferlini, Maddalena Graziosi, Elena Biagini, Daniela Turchetti, Francesca Gualandi, Cesare Rossi
Institutions: IRCCS Azienda Ospedliero-Universitaria di Bologna Policlinico di Sant'Orsola, ERN GUARD-Heart, University of Ferrara, Arcispedale Sant'Anna, University of Parma, Ospedale Maggiore Carlo Alberto Pizzardi, Ospedale Papa Giovanni XXIII, Azienda Ospedaliera Sant'Andrea, Sapienza University of Rome
Language: English
Subfield: Cardiology and Cardiovascular Medicine
Field: Medicine
Domain: Health Sciences
Open Access status: gold
Estimated APC paid: $3,137
Award: G669759558
OpenAlex ID: W7171498484