Enhancer Annotation and RPKM Profiling in embryonic stem cells.
Year: 2026
Type: dataset
Abstract: This dataset contains enhancer annotations and nascent transcription profiles derived from mouse embryonic stem cells (mESCs) and human embryonic stem cells (hESCs). *.bed files include enhancer regions identified based on H3K27ac ChIP-seq, p300 occupancy, and GRO-seq signal. *_RPKM files contain GRO-seq read coverage values normalized as RPKM across replicates and genome versions (e.g., mm10, hg38). ES_WT_E_overlapped_denovo_transcript.bed represents enhancer-overlapping transcripts identified by de novo transcript assembly. The data were processed using standard pipelines including HOMER, MACS3, and deepTools. These datasets were used to characterize enhancer activity and transcriptional regulation in pluripotent stem cells. File formats: BED, text (tab-delimited)Species: Mus musculus (mm10), Homo sapiens (hg38) All original accession numbers are listed in the Supplementary Table of the associated manuscript.
Source: Figshare
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W7196941343