v1.0.0 - Amyloid Landscape Explorer
Year: 2026
Type: dataset
Abstract: This resource contains the inputs and pre-calculated output data behind the Landscape of the Amyloid Explorer, along with the zipped codebases for both data processing and the landscape webpage implementation. Contents: input.zip Thermodynamics: Final_Structs_AE_energies_10072026.csv contains the residue-level ΔG profiles. Structure: bfactor_Average_Energy_Stack_10072026 contains the amyloid PDB files. Amyloid fibril metadata: amyloid_explorer_db.csv. output_10072026.zip Thermodynamics: preprocessed input tables, pairwise alignment scores, graph nodes/edges, cluster assignments, and per-cluster multiple alignments of residue-level ΔG profiles. Structure data: split protofilament structures, USalign comparison outputs, and structural similarity graphs. Integration data: merged thermodynamic/structural node tables enriched with fibril metadata. Includes a run manifest with execution metadata, configuration settings, and successful pipeline stage records. amyloid_landscape_explorer.zip Zipped codebase containing the complete processing pipeline used to create the landscape dataset. amyloid_landscape_explorer_webpage.zip Zipped codebase for the initial landscape webpage implementation. Links: Amyloid Explorer: https://amyloid-explorer.switchlab.org/ GitHub Repository: https://github.com/Wannes1/Amyloid_Landscape_Explorer
Language: English
Subfield: Physiology
Field: Medicine
Domain: Health Sciences
Open Access status: green
OpenAlex ID: W7204461906