Work

Single-cell spatial mapping reveals reproducible cell type organization and spatially-dependent gene expression in gastruloids

Year: 2026

Type: dataset

Abstract: This repository includes all the processed data, processing scripts to generate the processed data, annotations, and notebooks used to generate the plots found in "Single-cell spatial mapping reveals reproducible cell type organization and spatially-dependent gene expression in gastruloids". Raw seqFISH data used to generate the cell by gene tables in this repository can be found in the BioImage Archive (accession number S-BIAD3844).

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.22233770

Authors: Triandafillou, Catherine, Raj, Arjun

Institution: University of Pennsylvania

Language: English

Topic: Single-cell and spatial transcriptomics

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: green

OpenAlex ID: W7204929038

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Cited by: 1

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