Work

Single Cell Data for Clustering and Pseudotime Goodness-of-Fit Evaluation

Year: 2026

Type: dataset

Abstract: The zhengmix4 dataset is from,https://www.nature.com/articles/ncomms14049and includes 10X scRNA-seq readouts from human PBMCs. It can be used to evaluate clustering methods. It contains contains 3555 cells with 1556 genes.The pseuodtime_example dataset is a synthetic dataset from dyngen.https://www.nature.com/articles/s41467-021-24152-2It is simulated along a linear trajectory The dataset contains 500 cells and 155 genes, and its ground-truth pseudotime values are saved in the pseudotime column of the anndata.obs dataframe.

Source: Figshare

DOI: 10.6084/m9.figshare.33945907

Author: Kris Sankaran

Topic: Single-cell and spatial transcriptomics

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: green

OpenAlex ID: W7213790565

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