Year: 2026
Type: article
Abstract: Adverse drug events (ADEs) are a critical aspect of patient safety and pharmacovigilance, with significant implications for patient outcomes and public health monitoring. The increasing availability of electronic health records, social media, and online patient forums provides valuable yet challenging unstructured data sources for ADE surveillance. To address these challenges, we introduce CONORM, a novel framework integrating named entity recognition (NER) and entity normalization (EN) for ADE resolution across diverse textual domains. CONORM comprises CONORM-NER and CONORM-EN, featuring a dual-encoder architecture with dynamic context refining (DCR). The DCR mechanism adaptively combines isolated entity embeddings with contextual representations. Our analyses demonstrate this approach effectively adjusts model behavior according to text formality, enhances precision on out-of-distribution concepts, and substantially reduces normalization errors compared to context-agnostic baselines. CONORM was evaluated on tweets, forum posts, and structured product labels, achieving end-to-end F1-scores of 63.86%, 72.45%, and 84.99%, respectively, surpassing existing solutions by an average margin of 35%. These results highlight CONORM’s robust adaptability across domains, enabled by DCR’s effective context utilization. CONORM offers a scalable, reproducible solution for pharmacovigilance, with pre-computed target embeddings enhancing inference efficiency. Its generalization establishes it as a robust tool for ADE surveillance. Source code is publicly available at https://github.com/ds4dh/CONORM .
DOI: 10.1145/3858333
Institution: University of Geneva
Language: English
Subfield: Toxicology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W7221480011