Hyperspectral multi-trait modeling for rapid assessment of rice photosynthetic light-response traits under field conditions
Year: 2026
Type: article
Abstract: Light-response-curve (LRC) derived photosynthetic phenotyping traits, including the maximum net photosynthetic rate (PNmax), light-saturation point (Isat), light-compensation point (Icomp), and dark respiration rate (Rd), are important indicators of photosynthetic performance. However, conventional LI-6400-based measurements require tens of minutes per leaf, severely limiting high-throughput phenotyping and field-based stress monitoring. Here, we developed a hyperspectral approach that simultaneously estimates four key LRC-derived photosynthetic traits (PNmax, Isat, Icomp, and Rd) from leaf hyperspectral data. The framework was evaluated using observations collected under field conditions encompassing three years, three rice varieties, four nitrogen levels, three irrigation treatments, three leaf positions, and multiple measurement dates. Partial Least Squares Regression (PLSR) and machine learning models—including Backpropagation Artificial Neural Network (BP-ANN), Convolutional Neural Networks (CNN), and Support Vector Regression (SVR)—were tested with full spectrum and variable selection methods (Competitive Adaptive Reweighted Sampling, CARS; Successive Projections Algorithm, SPA; and Uninformative Variable Elimination, UVE). Variable selection generally improved model performance, with CARS providing the most stable overall results across the four traits. Multi-trait (MT) models outperformed single-trait (ST) counterparts, particularly on the held-out test set. Among all methods, nonlinear models achieved higher accuracy for individual traits. PLSR2+CARS provided the most consistent overall predictive performance across the four traits, achieving test-set R 2 values of 0.84, 0.69, 0.52, and 0.59 and RMSE values of 2.53 μmol (CO 2 ) m −2 s −1 , 344.08 μmol (photon) m −2 s −1 , 11.48 μmol (photon) m −2 s −1 , and 0.58 μmol (CO 2 ) m −2 s −1 for PNmax, Isat, Icomp, and Rd, respectively. These results indicate that leaf hyperspectral sensing combined with MT modeling has potential for high-throughput assessment of rice photosynthetic performance at the leaf level under field conditions.
Source: Frontiers in Plant Science
Language: English
Subfield: Ecology
Field: Environmental Science
Domain: Physical Sciences
SDG: Zero hunger
Open Access status: gold
Estimated APC paid: $3,801
OpenAlex ID: W7221676727