Year: 2026
Type: article
Abstract: Background: Niche differentiation is a fundamental mechanism facilitating the coexistence of sympatric species, yet the extent to which dietary partitioning is associated with gut microbial differentiation remains poorly understood in wild cervids. Methods: )-in Youhao National Nature Reserve, northeastern China. A total of 55 fresh fecal samples were collected in January 2024, including 19 moose, 7 red deer, and 29 roe deer samples. Dietary composition was characterized using rbcL DNA metabarcoding, while microbiome communities were assessed using full-length 16S rRNA gene sequencing. Results: Our results showed the three cervid species exhibited distinct dietary patterns, moose showed a relatively narrow woody-plant-dominated diet, whereas red deer and roe deer exhibited higher dietary diversity, and roe deer exhibited broader use of shared plant resources; microbiome communities also differed significantly among host species, with moose showing the clearest separation from red deer and roe deer in community composition and predicted microbial metabolic potentials; Procrustes analysis revealed significant concordance between dietary composition and microbiome community, and redundancy analysis also indicated that dietary plant composition explained a significant proportion of variation in microbiome community. Conclusion: These findings demonstrate that trophic differentiation among sympatric cervids is accompanied by coordinated variation in gut microbial community structure and predicted functional potential. The results support a close ecological association between dietary niche differentiation and host-associated microbiome variation, while causal and directional mechanisms require confirmation through longitudinal, experimental, and direct functional studies.
Source: Frontiers in Microbiology
Institution: Northeast Forestry University
Language: English
Topic: Gut microbiota and health
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: gold
Estimated APC paid: $3,801
OpenAlex ID: W7221819457