Work

Most metagenomic vanT calls are not vancomycin resistance genes

Year: 2026
Type: preprint
Abstract: Metagenomic resistome surveys frequently report vanT G as the dominant glycopeptide resistance gene, but these calls rely on homology without verifying catalytic residues or operon context. By analyzing 107,008 metagenome-assembled genomes, we demonstrate that only 3.7% of predicted vanT G genes possess the required active-site substitution, with the vast majority being misannotated alanine racemases. Incorporating structural and genomic context corrections reveals a novel split-architecture lineage in gut-associated Erysipelotrichales missed by current profiling tools.
Language: English
Field: Medicine
Open Access status: green
OpenAlex ID: W7223306863
Cites: 15
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Related to: 10