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Jérôme Bouquet

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
2015 · Alex L Greninger, Samia N Naccache, et al. · Genome Medicine · 553
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A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples
2014 · Samia N. Naccache, Scot Federman, et al. · Genome Research · 459
Erratum to: Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing
2016 · Alexander L. Greninger, Kevin Messacar, et al. · Genome Medicine · 333
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The SARS-CoV-2 monoclonal antibody combination, AZD7442, is protective in nonhuman primates and has an extended half-life in humans
2022 · Yueh-Ming Loo, Patrick M. McTamney, et al. · Science Translational Medicine · 216
The eukaryotic gut virome in hematopoietic stem cell transplantation: new clues in enteric graft-versus-host disease
2017 · Jérôme Legoff, Matthieu Resche-Rigon, et al. · Nature Medicine · 143
Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing
2015 · Alexander L. Greninger, Kevin Messacar, et al. · Genome Medicine · 122
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Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico
2018 · Julien Thézé, Tony Li, et al. · Cell Host & Microbe · 106
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Close Similarity between Sequences of Hepatitis E Virus Recovered from Humans and Swine, France, 2008−2009
2011 · Jerome Bouquet, Sophie Tesse, et al. · Emerging infectious diseases · 103
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Longitudinal Transcriptome Analysis Reveals a Sustained Differential Gene Expression Signature in Patients Treated for Acute Lyme Disease
2016 · Jerome Bouquet, Mark J. Soloski, et al. · mBio · 101
Microbial burden and viral exacerbations in a longitudinal multicenter COPD cohort
2020 · Jerome Bouquet, David E. Tabor, et al. · Respiratory Research · 90
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Biological activities of nitidine, a potential anti-malarial lead compound
2012 · Jérome Bouquet, Marion Rivaud, et al. · Malaria Journal · 74
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Experimental Zika Virus Inoculation in a New World Monkey Model Reproduces Key Features of the Human Infection
2017 · Charles Y. Chiu, Claudia Sánchez-San Martín, et al. · Scientific Reports · 67
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The Association of Baseline Plasma SARS-CoV-2 Nucleocapsid Antigen Level and Outcomes in Patients Hospitalized With COVID-19
2022 · ACTIV-3/TICO Study Group, Angela J. Rogers, et al. · Annals of Internal Medicine · 60
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Metagenomic-based Surveillance of Pacific Coast tick Dermacentor occidentalis Identifies Two Novel Bunyaviruses and an Emerging Human Ricksettsial Pathogen
2017 · Jerome Bouquet, Michael Melgar, et al. · Scientific Reports · 58
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New models of hepatitis E virus replication in human and porcine hepatocyte cell lines
2012 · Sophie Rogée, Neil Talbot, et al. · Journal of General Virology · 56
Genetic characterization and codon usage bias of full-length Hepatitis E virus sequences shed new lights on genotypic distribution, host restriction and genome evolution
2012 · Jerome Bouquet, Pierre Cherel, et al. · Infection Genetics and Evolution · 45
Metagenomic Next-Generation Sequencing of the 2014 Ebola Virus Disease Outbreak in the Democratic Republic of the Congo
2019 · Tony Li, Placide Mbala-Kingebeni, et al. · Journal of Clinical Microbiology · 37
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Whole blood human transcriptome and virome analysis of ME/CFS patients experiencing post-exertional malaise following cardiopulmonary exercise testing
2019 · Jerome Bouquet, Tony Li, et al. · PLoS ONE · 36
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Safety, Tolerability and Pharmacokinetics of Half-Life Extended Severe Acute Respiratory Syndrome Coronavirus 2 Neutralizing Monoclonal Antibodies AZD7442 (Tixagevimab-Cilgavimab) in Healthy Adults
2023 · Pablo Forte-Soto, Muna Albayaty, et al. · The Journal of Infectious Diseases · 32
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Identical Consensus Sequence and Conserved Genomic Polymorphism of Hepatitis E Virus during Controlled Interspecies Transmission
2012 · Jerome Bouquet, Justine Cheval, et al. · Journal of Virology · 32
Differentiation enhances Zika virus infection of neuronal brain cells
2018 · Claudia Sánchez-San Martín, Tony Li, et al. · Scientific Reports · 29
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Early changes in the circulating T cells are associated with clinical outcomes after PD-L1 blockade by durvalumab in advanced NSCLC patients
2021 · Elliot Naidus, Jerome Bouquet, et al. · Cancer Immunology Immunotherapy · 28
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Quantitative Proteomics Identifies Host Factors Modulated during Acute Hepatitis E Virus Infection in the Swine Model
2014 · Sophie Rogée, Morgane Le Gall, et al. · Journal of Virology · 26
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RNA-Seq Analysis of Gene Expression, Viral Pathogen, and B-Cell/T-Cell Receptor Signatures in Complex Chronic Disease
2017 · Jerome Bouquet, Jennifer L. Gardy, et al. · Clinical Infectious Diseases · 25
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A diagnostic classifier for gene expression-based identification of early Lyme disease
2022 · Venice Servellita, Jerome Bouquet, et al. · Communications Medicine · 22
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Works count: 70
Citation count: 2,932
H-index: 24
I10-index: 28
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