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Chandran Nithin

Observed names: Chandran, Nithin, Nithin C, Nithin C., Nithin Chandran, Nithin, Chandran
ORCID: 0000-0001-8212-6093
Observed ORCID: 0000-0001-8212-6093
OpenAlex ID: A5034470404
Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements
2020 · Ilaria Manfredonia, Chandran Nithin, et al. · Nucleic Acids Research · 277
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QRNAS: software tool for refinement of nucleic acid structures
2019 · Juliusz Stasiewicz, Sunandan Mukherjee, et al. · BMC Structural Biology · 88
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RNA-Puzzles Round V: blind predictions of 23 RNA structures
2024 · Fan Bu, Yagoub Adam, et al. · Nature Methods · 74
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Targeting Non-Coding RNAs in Plants with the CRISPR-Cas Technology is a Challenge yet Worth Accepting
2015 · Jolly Basak, Chandran Nithin · Frontiers in Plant Science · 72
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MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes
2022 · Aleksandra E Badaczewska-Dawid, Chandran Nithin, et al. · Nucleic Acids Research · 59
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Computational modeling of RNA 3D structure based on experimental data
2019 · Almudena Ponce-Salvatierra, Astha, et al. · Bioscience Reports · 57
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Molecular architecture of protein-RNA recognition sites
2015 · Amita Barik, Nithin C, et al. · Journal of Biomolecular Structure and Dynamics · 53
Bioinformatics Tools and Benchmarks for Computational Docking and 3D Structure Prediction of RNA-Protein Complexes
2018 · Chandran Nithin, Pritha Ghosh, et al. · Genes · 49
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A non-redundant protein-RNA docking benchmark version 2.0
2016 · Chandran Nithin, Sunandan Mukherjee, et al. · Proteins Structure Function and Bioinformatics · 47
Probing binding hot spots at protein–RNA recognition sites
2015 · Amita Barik, Chandran Nithin, et al. · Nucleic Acids Research · 47
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A protein–RNA docking benchmark (I): Nonredundant cases
2012 · Amita Barik, Nithin C., et al. · Proteins Structure Function and Bioinformatics · 46
Comparative analysis of RNA 3D structure prediction methods: towards enhanced modeling of RNA–ligand interactions
2024 · Chandran Nithin, Sebastian Kmiecik, et al. · Nucleic Acids Research · 44
Genome-wide identification of miRNAs and lncRNAs in Cajanus cajan
2017 · Chandran Nithin, Amal Thomas, et al. · BMC Genomics · 44
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Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures
2015 · Chandran Nithin, Nisha Patwa, et al. · BMC Plant Biology · 44
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Identification and characterization of differentially expressed Phaseolus vulgaris miRNAs and their targets during mungbean yellow mosaic India virus infection reveals new insight into Phaseolus-MYMIV interaction
2018 · Nisha Patwa, Chandran Nithin, et al. · Genomics · 35
NCodR: A multi-class support vector machine classification to distinguish non-coding RNAs in Viridiplantae
2022 · Chandran Nithin, Sunandan Mukherjee, et al. · Quantitative Plant Biology · 25
Constrained peptides mimic a viral suppressor of RNA silencing
2021 · Arne Kuepper, Niall M McLoughlin, et al. · Nucleic Acids Research · 25
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Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models
2022 · Julita Gumna, Maciej Antczak, et al. · International Journal of Molecular Sciences · 24
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Modeling of Three-Dimensional RNA Structures Using SimRNA
2020 · Tomasz K. Wirecki, Chandran Nithin, et al. · Methods in molecular biology · 24
RNA and DNA G-quadruplexes bind to human dicer and inhibit its activity
2021 · Natalia Koralewska, Agnieszka Szczepanska, et al. · Cellular and Molecular Life Sciences · 22
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Exploring protein functions from structural flexibility using CABS ‐flex modeling
2024 · Chandran Nithin, Rocco Peter Fornari, et al. · Protein Science · 21
A structure-based model for the prediction of protein–RNA binding affinity
2019 · Chandran Nithin, Sunandan Mukherjee, et al. · RNA · 19
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Molecular insights into RNA recognition and gene regulation by the TRIM-NHL protein Mei-P26
2022 · Anna Salerno-Kochan, Andreas Horn, et al. · Life Science Alliance · 10
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Dissecting water binding sites at protein–protein interfaces: a lesson from the atomic structures in the Protein Data Bank
2018 · Sunandan Mukherjee, Chandran Nithin, et al. · Journal of Biomolecular Structure and Dynamics · 10
Computational methods for modeling protein–protein interactions in the AI era: Current status and future directions
2025 · Hao Li, Chandran Nithin, et al. · Drug Discovery Today · 9
Works count: 52
Citation count: 1,254
H-index: 21
I10-index: 24
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