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Rahmatullah Roche

Observed name: Roche, Rahmatullah
ORCID: 0009-0005-8593-8210
Observed ORCID: 0009-0005-8593-8210
OpenAlex ID: A5041995175
EquiPNAS: improved protein–nucleic acid binding site prediction using protein-language-model-informed equivariant deep graph neural networks
2024 · Rahmatullah Roche, Bernard Moussad, et al. · Nucleic Acids Research · 90
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E(3) equivariant graph neural networks for robust and accurate protein-protein interaction site prediction
2023 · Rahmatullah Roche, Bernard Moussad, et al. · PLoS Computational Biology · 37
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The transformative power of transformers in protein structure prediction
2023 · Bernard Moussad, Rahmatullah Roche, et al. · Proceedings of the National Academy of Sciences · 37
Recent Advances in Protein Homology Detection Propelled by Inter-Residue Interaction Map Threading
2021 · Sutanu Bhattacharya, Rahmatullah Roche, et al. · Frontiers in Molecular Biosciences · 17
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DisCovER : distance‐ and orientation‐based covariational threading for weakly homologous proteins
2021 · Sutanu Bhattacharya, Rahmatullah Roche, et al. · Proteins Structure Function and Bioinformatics · 16
Hybridized distance- and contact-based hierarchical structure modeling for folding soluble and membrane proteins
2021 · Rahmatullah Roche, Sutanu Bhattacharya, et al. · PLoS Computational Biology · 10
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PIQLE: protein–protein interface quality estimation by deep graph learning of multimeric interaction geometries
2023 · Md Hossain Shuvo, Mohimenul Karim, et al. · Bioinformatics Advances · 9
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The landscape of RNA 3D structure modeling with transformer networks
2024 · Sumit Tarafder, Rahmatullah Roche, et al. · Biology Methods and Protocols · 6
Single-sequence protein-RNA complex structure prediction by geometric attention-enabled pairing of biological language models
2024 · Rahmatullah Roche, Sumit Tarafder, et al. · Cell Systems · 5
PolyFold: An interactive visual simulator for distance-based protein folding
2020 · Andrew J. McGehee, Sutanu Bhattacharya, et al. · PLoS ONE · 5
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Contact-Assisted Threading in Low-Homology Protein Modeling
2023 · Sutanu Bhattacharya, Rahmatullah Roche, et al. · Methods in molecular biology · 3
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Protein–Protein Interaction Site Prediction via EquiPPIS and Its Application in Studying Viral Replication
2025 · Rahmatullah Roche, Sumit Tarafder, et al. · Methods in molecular biology · 1
Advances in Language-Model-Informed Protein–Nucleic Acid Binding Site Prediction
2025 · Sumit Tarafder, Xinyu Wang, et al. · Methods in molecular biology · 1
Data for CASP15 performance benchmarking of the state-of-the-art protein structure prediction methods
2023 · Moussad, Bernard, Roche, Rahmatullah, et al. · Zenodo (CERN European Organization for Nuclear Research) · 1
A protocol for single-sequence protein-RNA complex structure prediction using ProRNA3D-single
2026 · Rahmatullah Roche, Sumit Tarafder, et al. · STAR Protocols
EquiPNAS public data
2023 · Roche, Rahmatullah, Moussad, Bernard, et al. · Zenodo (CERN European Organization for Nuclear Research)
EquiPNAS models
2023 · Roche, Rahmatullah, Moussad, Bernard, et al. · Zenodo (CERN European Organization for Nuclear Research)
EquiPPIS public data
2022 · Roche, Rahmatullah, Moussad, Bernard, et al. · Zenodo (CERN European Organization for Nuclear Research)
Trained model for rrQNet
2022 · Roche, Rahmatullah, Bhattacharya, Sutanu, et al. · Zenodo (CERN European Organization for Nuclear Research)
rrQNet : Protein contact map quality estimation by deep evolutionary reconciliation
2022 · Rahmatullah Roche, Sutanu Bhattacharya, et al. · Proteins Structure Function and Bioinformatics
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Hybridized distance- and contact- based hierarchical protein structure modeling using DConStruct
2021 · Rahmatullah Roche, Sutanu Bhattacharya, et al. · ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB)
Works count: 24
Citation count: 238
H-index: 7
I10-index: 6
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