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Thom Cuddihy

Observed names: Cuddihy Thom, Cuddihy, Thom, Thom P. Cuddihy, Thomas Cuddihy
ORCID: 0000-0003-3071-7742
Observed ORCID: 0000-0003-3071-7742
OpenAlex ID: A5042018908
Clinical Implementation of Routine Whole-genome Sequencing for Hospital Infection Control of Multi-drug Resistant Pathogens
2022 · Brian M Forde, Haakon Bergh, et al. · Clinical Infectious Diseases · 94
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Genetic Variants in ERAP 1 and ERAP 2 Associated With Immune‐Mediated Diseases Influence Protein Expression and the Isoform Profile
2017 · Aimee L. Hanson, Thomas Cuddihy, et al. · Arthritis & Rheumatology · 62
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Determinants of Zika virus host tropism uncovered by deep mutational scanning
2019 · Yin Xiang Setoh, Alberto A. Amarilla, et al. · Nature Microbiology · 61
Using genomics to understand inter- and intra- outbreak diversity of Pasteurella multocida isolates associated with fowl cholera in meat chickens
2020 · Lida Omaleki, Patrick J. Blackall, et al. · Microbial Genomics · 14
Emergence of a carbapenem-resistant atypical uropathogenic Escherichia coli clone as an increasing cause of urinary tract infection
2025 · Lachlan L. Walker, Minh-Duy Phan, et al. · Nature Communications · 13
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Optimized Method for Bacterial Nucleic Acid Extraction from Positive Blood Culture Broth for Whole-Genome Sequencing, Resistance Phenotype Prediction, and Downstream Molecular Applications
2022 · Michelle J. Bauer, Anna Maria Peri, et al. · Journal of Clinical Microbiology · 13
ScrepYard : An online resource for disulfide‐stabilized tandem repeat peptides
2023 · Junyu Liu, Michael Maxwell, et al. · Protein Science · 10
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Phase variation in the glycosyltransferase genes of Pasteurella multocida associated with outbreaks of fowl cholera on free-range layer farms
2022 · Lida Omaleki, Patrick J. Blackall, et al. · Microbial Genomics · 9
CATHAI: cluster analysis tool for healthcare-associated infections
2022 · Thom Cuddihy, Patrick N A Harris, et al. · Bioinformatics Advances · 8
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HAIviz: an interactive dashboard for visualising and integrating healthcare-associated genomic epidemiological data
2024 · Budi Permana, Patrick N. A. Harris, et al. · Microbial Genomics · 7
PIRT-Seq: a high-resolution whole-genome assay to identify protein-coding genes
2025 · Emily C A Goodall, Freya Hodges, et al. · Nucleic Acids Research · 5
The Genomic Epidemiology of Clinical Burkholderia pseudomallei Isolates in North Queensland, Australia
2024 · Ian Gassiep, Mark D. Chatfield, et al. · Pathogens · 5
Systematic benchmarking of ‘all-in-one’ microbial SNP calling pipelines
2022 · Caitlin Falconer, Thom Cuddihy, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 4
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Melioidosis Queensland: An analysis of clinical outcomes and genomic factors
2023 · Ian Gassiep, Delaney Burnard, et al. · PLoS neglected tropical diseases · 3
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Snapshot Genomic Surveillance Reveals Insights into Antimicrobial Resistance and Lineage Diversity of Uropathogens in Older Adults in Queensland
2025 · Budi Permana, Caitlin Falconer, et al. · Open Forum Infectious Diseases · 2
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SRA Down Under: Cache and Analysis Platform for Infectious Disease
2019 · Cuddihy Thom, Forde Brian, et al. · Studies in health technology and informatics · 2
Genome scale identification of new genes using saturated reporter transposon mutagenesis
2024 · Emily C. A. Goodall, Freya Hodges, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
ScrepYard: an online resource for disulfide-stabilised tandem repeat peptides
2022 · Junyu Liu, Michael Maxwell, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
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BLITSFR: scalable comparative genomics with self-contained interactive single file report
2026 · Budi Permana, Thom Cuddihy, et al. · Bioinformatics Advances
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Interactive data analysis and reporting with SCIFR: A Single-File SPA Approach
2025 · Budi Permana, Thom P. Cuddihy, et al. · bioRxiv (Cold Spring Harbor Laboratory)
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The molecular epidemiology of Burkholderia pseudomallei in North Queensland
2024 · Ian Gassiep, Delaney Burnard, et al. · Pathology
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An optimised method for bacterial nucleic acid extraction from positive blood culture broths for whole genome sequencing, resistance phenotype prediction and downstream molecular applications
2022 · Michelle J. Bauer, Anna Maria Peri, et al. · bioRxiv (Cold Spring Harbor Laboratory)
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An automatic tool installer with integrated testing for a public Galaxy
2021 · Catherine Bromhead, Thom Cuddihy, et al.
An automatic tool installer with integrated testing for a public Galaxy
2021 · Catherine Bromhead, Thom Cuddihy, et al.
Genetic Variants at Chromosome 5q15 Associated with Immune-Mediated Diseases Influence Gene Expression and Isoform Profile of the Endoplasmic Reticulum Aminopeptidase
2015 · Aimee L. Hanson, Katelin Haynes, et al. · Arthritis
Works count: 26
Citation count: 313
H-index: 8
I10-index: 7
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