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Antonina Hafner

The multiple mechanisms that regulate p53 activity and cell fate
2019 · Antonina Hafner, Martha L. Bulyk, et al. · Nature Reviews Molecular Cell Biology · 1,157
Visualizing DNA folding and RNA in embryos at single-cell resolution
2019 · Leslie J. Mateo, Sedona E. Murphy, et al. · Nature · 451
How subtle changes in 3D structure can create large changes in transcription
2021 · Jordan Xiao, Antonina Hafner, et al. · eLife · 161
The spatial organization of transcriptional control
2022 · Antonina Hafner, Alistair Boettiger · Nature Reviews Genetics · 158
Loop stacking organizes genome folding from TADs to chromosomes
2023 · Antonina Hafner, Minhee Park, et al. · Molecular Cell · 126
p53 pulses lead to distinct patterns of gene expression albeit similar DNA-binding dynamics
2017 · Antonina Hafner, Jacob Stewart-Ornstein, et al. · Nature Structural & Molecular Biology · 94
A Comprehensive Drosophila melanogaster Transcription Factor Interactome
2019 · Leila Shokri, Sachi Inukai, et al. · Cell Reports · 89
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mSWI/SNF promotes Polycomb repression both directly and through genome-wide redistribution
2021 · Christopher M. Weber, Antonina Hafner, et al. · Nature Structural & Molecular Biology · 88
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Automated protein-DNA interaction screening of Drosophila regulatory elements
2011 · Korneel Hens, Jean-Daniel Feuz, et al. · Nature Methods · 85
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Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos
2013 · Stephen S Gisselbrecht, Luis A Barrera, et al. · Nature Methods · 65
Quantifying the Central Dogma in the p53 Pathway in Live Single Cells
2020 · Antonina Hafner, José Reyes, et al. · Cell Systems · 37
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A yeast one‐hybrid and microfluidics‐based pipeline to map mammalian gene regulatory networks
2013 · Carine Gubelmann, Sebastian M Waszak, et al. · Molecular Systems Biology · 33
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Identification of universal and cell-type specific p53 DNA binding
2020 · Antonina Hafner, Lyubov Kublo, et al. · BMC Molecular and Cell Biology · 27
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Epiregulon: Single-cell transcription factor activity inference to predict drug response and drivers of cell states
2025 · Tomasz Włodarczyk, Aaron Lun, et al. · Nature Communications · 18
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A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation
2022 · Gerard Llimos, Vincent Gardeux, et al. · Nature Communications · 16
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Context-dependent transcriptional interpretation of mitogen activated protein kinase signaling in theDrosophilaembryo
2013 · Yoosik Kim, Antonina Iagovitina, et al. · Chaos An Interdisciplinary Journal of Nonlinear Science · 14
Super-enhancer interactomes from single cells link clustering and transcription
2024 · Derek J. Le, Antonina Hafner, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 13
Single-cell chromatin state transitions during epigenetic memory formation
2026 · Taihei Fujimori, Abby R. Thurm, et al. · Science Advances · 12
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SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data
2023 · Lindsay Lee, Hongyu Yu, et al. · Nature Communications · 8
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Promoter reinforcement supports transcriptional resilience in drug-resistant cancer
2026 · Vasumathi Kameswaran, Sayantanee Paul, et al. · Nature Structural & Molecular Biology · 5
Single-cell 3D genome imaging shows super-enhancer hubs are rare, nonspecific, and neither necessary nor sufficient for transcriptional bursting
2026 · Derek J. Le, Antonina Hafner, et al. · Cell Genomics · 1
Data from: Transcription from megabase-scale heterochromatin generates neural barcodes
2026 · Buckley, Alex, Vetralla, Carlo, et al. · DRYAD
ORCA data for mESC super-enhancers
2026 · Le, Derek, Hafner, Antonina, et al. · Zenodo (CERN European Organization for Nuclear Research)
Abstract 2280: Ligand-activated AR promotes the survival of endocrine therapy-responsive ER+ breast cancer
2026 · Patrick Aouad, Eliah Shamir, et al. · Cancer Research
Author response: How subtle changes in 3D structure can create large changes in transcription
2021 · Jordan Yupeng Xiao, Antonina Hafner, et al. · eLife
Works count: 43
Citation count: 2,661
H-index: 15
I10-index: 18
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